Chromosomal | Reported gene(s) | SNP | Context | P value | Odds ratio (95% CI) | Population | Ref. |
---|---|---|---|---|---|---|---|
1q21.3 | LCE3B, LCE3D | rs6677595 | Intergenic | 2.1 × 10−33 | 1.26 [NR] | European | (Tsoi et al. [2012]) |
LCE3D, LCE3A | rs4085613 | Intergenic | 7 × 10−30 | 1.32 [1.25 to 1.39] | Chinese | (Zhang et al. [2009]) | |
LCE3D | rs4112788 | Intergenic | 3 × 10−10 | 1.29 [1.19 to 1.40] | European | (Strange et al. [2010]) | |
1p36.23 | SLC45A1, TNFRSF9 | rs11121129 | Intergenic | 1.7 × 10−8 | 1.13 [NR] | European | (Tsoi et al. [2012]) |
1p36.11 | RUNX3 | rs7536201 | nearGene-5 | 2.3 × 10−12 | 1.13 [NR] | European | |
IL28RA | rs7552167 | Intergenic | 8.5 × 10−12 | 1.21 [NR] | European | ||
rs4649203 | Intergenic | 7 × 10−8 | 1.13 [1.05 to 1.22] | European | (Strange et al. [2010]) | ||
3.91 × 10−12 | 1.16 [NR] | Chinese | (Cheng et al. [2013]) | ||||
1p31.3 | IL23R | rs2201841 | Intron | 1.75× 10−10 | 1.23 [NR] | European | (Elder [2009]) |
rs9988642 | nearGene-3 | 1.1 × 10−26 | 1.52 [NR] | European | (Tsoi et al. [2012]) | ||
rs11209026 | Missense | 7 × 10−7 | 1.49 [1.27 to 1.74] | European | (Strange et al. [2010]) | ||
rs2201841 | Intron | 3 × 10−8 | 1.13 [NR] | European | (Nair et al. [2009]) | ||
2q24.3 | IFIH1 | rs17716942 | Intron | 1 × 10−13 | 1.29 [1.17 to 1.43] | European | (Strange et al. [2010]) |
2p16.1 | FLJ16341, REL | rs62149416 | Intergenic | 1.8 × 10−17 | 1.17 [NR] | European | (Tsoi et al. [2012]) |
REL | rs702873 | Intron | 4 × 10−9 | 1.12 [1.04 to 1.20] | European | (Strange et al. [2010]) | |
NR | rs842636 | Intron | 6 × 10−6 | 1.15 [NR] | European | (Stuart et al. [2010]) | |
2p15 | B3GNT2 | rs10865331 | Intergenic | 4.7 × 10−10 | 1.12 [NR] | European | (Tsoi et al. [2012]) |
5q33.3 | PTTG1 | rs2431697 | Intergenic | 1.11 × 10−8 | 1.20 [1.13 to 1.28] | Chinese | (Sun et al. [2010]) |
IL12B | rs12188300 | Intergenic | 3.2 × 10−53 | 1.58 [NR] | European | (Tsoi et al. [2012]) | |
rs2546890 | ncRNA | 1 × 10−20 | 1.54 [1.32 to 1.79] | European | (Ellinghaus et al. [2010]) | ||
rs3213094 | Intron | 5 × 10−11 | 1.39 [1.26 to 1.53] | European | (Strange et al. [2010]) | ||
rs2082412 | Intergenic | 2 × 10−28 | 1.44 [NR] | European | (Nair et al. [2009]) | ||
rs3213094 | Intron | 3 × 10−26 | 1.28 [1.23 to 1.35] | Chinese | (Zhang et al. [2009]) | ||
rs2082412 | Intergenic | 4.75× 10−18 | 1.42 [NR] | European | (Elder [2009]) | ||
5q33.1 | TNIP1/ANXA6 | rs3762999 | Intergenic | 4.55 × 10−18 | 1.23 [1.18 to 1.29] | Chinese | (Sun et al. [2010]) |
rs999556 | Intergenic | 3.83 × 10−21 | 1.25 [1.20 to 1.31] | Chinese | |||
TNIP1 | rs17728338 | Intergenic | 1.4× 10−13 | 1.56 [NR] | European | (Elder [2009]) | |
rs2233278 | UTR-5 | 2.2 × 10−42 | 1.59 [NR] | European | (Tsoi et al. [2012]) | ||
rs17728338 | Intergenic | 1 × 10−20 | 1.59 [NR] | European | (Nair et al. [2009]) | ||
IL13, IL4 | rs1295685 | Intergenic | 3.4 × 10−10 | 1.18 [NR] | European | (Tsoi et al. [2012]) | |
IL13 | rs20541 | Missense | 5 × 10−15 | 1.27 [NR] | European | (Nair et al. [2009]) | |
5q15 | ERAP1 | rs27432 | Intron | 1.9 × 10−20 | 1.2 [NR] | European | (Tsoi et al. [2012]) |
rs27524 | Intron | 3 × 10−11 | 1.13 [1.05 to 1.22] | European | (Strange et al. [2010]) | ||
rs151823 | Intergenic | 9.32 × 10−9 | 0.89 [0.85 to 0.92] | Chinese | (Sun et al. [2010]) | ||
5q15 | LNPEP | rs2303138 | Missense | 1.83 × 10−13 | 1.16 [NR] | Chinese | (Cheng et al. [2013]) |
6q25.4 | EXOC2, IRF4 | rs9504361 | Intergenic | 2.1 × 10−11 | 1.12 [NR] | European | (Tsoi et al. [2012]) |
6q25.3 | TAGAP | rs2451258 | Intergenic | 3.4 × 10−8 | 1.12 [NR] | European | |
6q23.3 | TNFAIP3 | rs610604 | Intron | 3.07× 10−10 | 1.23 [NR] | European | (Elder [2009]) |
 |  | rs582757 | Intron | 2.2 × 10−25 | 1.23 [NR] | European | (Tsoi et al. [2012]) |
 |  | rs610604 | Intron | 9 × 10−12 | 1.19 [NR] | European | (Nair et al. [2009]) |
6q21 | TRAF3IP2 | rs33980500 | Missense | 4.2 × 10−45 | 1.52 [NR] | European | (Tsoi et al. [2012]) |
rs458017 | Missense | 2 × 10−16 | 1.37 [1.22 to 1.54] | European | (Strange et al. [2010]) | ||
rs13196377 | Intron | 1.39 × 10−12 | 1.67 [1.45 to 1.93] | European | (Huffmeier et al. [2010]) | ||
rs13190932 | Intron | 8.56 × 10−17 | 1.83 [1.59 to 2.12] | European | |||
rs13210247 | Missense | 1.73 × 10−14 | 1.69 [1.48 to 1.94] | European | |||
rs33980500 | Missense | 1 × 10−16 | NR | European | (Ellinghaus et al. [2010]) | ||
rs240993 | Intron | 5 × 10−20 | 1.25 [1.16 to 1.34] | European | (Strange et al. [2010]) | ||
6p21.33 | HLA-C | rs1265181 | Intergenic | 1.93 × 10−208 | 22.62 [NR] | Chinese | (Zhang et al. [2009]) |
rs12191877 | Intergenic | 2.98× 10−178 | 2.87 [NR] | European | (Elder [2009]) | ||
rs13191343 | Intergenic | 2.32 × 10−72 | 2.37 [2.16 to 2.61] | European | (Huffmeier et al. [2010]) | ||
rs12191877 | Intergenic | 4 × 10−32 | 2.79 [2.35 to 3.33] | European | (Ellinghaus et al. [2010]) | ||
rs10484554 | Intergenic | 4 × 10−214 | 4.66 [4.23 to 5.13] | European | (Strange et al. [2010]) | ||
rs12191877 | Intergenic | 1 × 10−100 | 2.64 [NR] | European | (Nair et al. [2009]) | ||
rs10484554 | Intergenic | 2 × 10−39 | 2.8 [2.40 to 3.30] | European | (Liu et al. [2008]) | ||
rs3134792 | Intergenic | 1 × 10−9 | NR | European | (Capon et al. [2008]) | ||
HLA-B, HLA-C | rs4406273 | Intergenic | 4.5 × 10−723 | 4.32 [NR] | European | (Tsoi et al. [2012]) | |
HCP5 | rs2395029 | ncRNA | 2 × 10−26 | 4.1 [3.10 to 5.30] | European | (Liu et al. [2008]) | |
7p14.1 | ELMO1 | rs2700987 | Intron | 4.3 × 10−9 | 1.11 [NR] | European | (Tsoi et al. [2012]) |
8p23.2 | CSMD1 | rs7007032 | Intron | 3.78 × 10−8 | 1.16 [1.10 to 1.22] | Chinese | (Sun et al. [2010]) |
rs10088247 | Intron | 4.54 × 10−9 | 1.17 [1.11 to 1.23] | Chinese | |||
9q34.13 | TSC1 | rs1076160 | Intron | 6 × 10−6 | 1.09 [NR] | European | (Nair et al. [2009]) |
9q31.2 | KLF4 | rs10979182 | Intergenic | 2.3 × 10−8 | 1.12 [NR] | European | (Tsoi et al. [2012]) |
9p21.1 | DDX58 | rs11795343 | Intron | 8.4 × 10−11 | 1.11 [NR] | European | |
10q22.3 | ZMIZ1 | rs1250546 | Intron | 6.8 × 10−7 | 1.1 [NR] | European | |
11q24.3 | ETS1 | rs3802826 | Intron | 9.5 × 10−10 | 1.12 [NR] | European | |
ZC3H12C | rs4561177 | nearGene-5 | 7.7 × 10−13 | 1.14 [NR] | European | ||
11q13.1 | RPS6KA4, PRDX5 | rs645078 | Intergenic | 2.2 × 10−6 | 1.09 [NR] | European | |
12q13.3 | STAT2, IL23A | rs2066819 | Intergenic | 5.4 × 10−17 | 1.39 [NR] | European | |
IL23A, STAT2 | rs2066808 | Intron | 1 × 10−9 | 1.34 [NR] | European | (Nair et al. [2009]) | |
IL23A | rs2066807 | Missense | 1.9× 10−5 | 1.33 [NR] | European | (Elder [2009]) | |
rs2066808 | Intron | 2 × 10−7 | 1.49 [1.28 to 1.73] | European | (Strange et al. [2010]) | ||
12q13.2 | RPS26 | rs12580100 | Intergenic | 1 × 10−6 | 1.17 [NR] | European | (Stuart et al. [2010]) |
13q14.11 | COG6 | rs7993214 | Intron | 2 × 10−6 | 1.41 [1.22 to 1.61] | European | (Liu et al. [2008]) |
GJB2 | rs3751385 | UTR-3 | 8.57 × 10−8 | 0.87 [0.84 to 0.91] | Chinese | (Sun et al. [2010]) | |
14q13.2 | NFKBIA, PSMA6 | rs12586317 | Intron | 2 × 10−8 | 1.15 [NR] | European | (Stuart et al. [2010]) |
NFKBIA | rs8016947 | Intergenic | 2 × 10−11 | 1.19 [1.11 to 1.27] | European | (Strange et al. [2010]) | |
3.9 × 10−10 | 1.12 [NR] | Chinese | (Li et al. [2013]) | ||||
16p13.13 | PRM3, SOCS1 | rs367569 | Intergenic | 4.9 × 10−8 | 1.13 [NR] | European | (Tsoi et al. [2012]) |
16p11.2 | PRSS53, FBXL19 | rs12445568 | Intergenic | 1.2 × 10−16 | 1.16 [NR] | European | |
FBXL19, POL3S | rs10782001 | Intron | 9 × 10−10 | 1.16 [NR] | European | (Stuart et al. [2010]) | |
17q25.3 | CARD14 | rs11652075 | Missense | 3.4 × 10−8 | 1.11 [NR] | European | (Tsoi et al. [2012]) |
17q21.2 | PTRF, STAT3, STAT5A/B | rs963986 | Intergenic | 5.3 × 10−9 | 1.15 [NR] | European | |
17q11.2 | NOS2 | rs28998802 | Intron | 3.3 × 10−16 | 1.22 [NR] | European | |
rs4795067 | Intron | 4 × 10−11 | 1.19 [NR] | European | (Stuart et al. [2010]) | ||
NR | rs1975974 | Intergenic | 1 × 10-7 | 1.17 [NR] | European | ||
18q22.1 | SERPINB8 | rs514315 | nearGene-3 | 5.92 × 10−9 | 0.87 [0.83 to 0.91] | Chinese | (Sun et al. [2010]) |
18q21.2 | POL1, STARD6, MBD2 | rs545979 | Intergenic | 3.5 × 10−10 | 1.12 [NR] | European | (Tsoi et al. [2012]) |
19q13.41 | ZNF816A | rs9304742 | Intron | 2.11 × 10−9 | 0.88 [0.84 to 0.92] | Chinese | (Sun et al. [2010]) |
19p13.2 | ILF3, CARM1 | rs892085 | Intergenic | 3.0 × 10−17 | 1.17 [NR] | European | (Tsoi et al. [2012]) |
TYK2 | rs34536443 | Missense | 9.1 × 10−31 | 1.88 [NR] | European | ||
rs12720356 | Missense | 4 × 10−11 | 1.4 [1.23 to 1.61] | European | (Strange et al. [2010]) | ||
rs280519 | Intron | 4 × 10−9 | 1.13 [1.05 to 1.21] | European | |||
20q13.13 | ZNF313 | rs2235617 | Intron | 2 × 10−6 | 1.2 [1.11 to 1.30] | European | |
RNF114 | rs1056198 | Intron | 1.5 × 10−14 | 1.16 [NR] | European | (Tsoi et al. [2012]) | |
ZNF313 | rs495337 | Cds-synon | 1 × 10−8 | 1.25 [1.12 to 1.39] | European | (Capon et al. [2008]) | |
20q13.12 | SDC4 | rs1008953 | Intergenic | 1 × 10−7 | 1.14 [NR] | European | (Stuart et al. [2010]) |
22q11.21 | UBE2L3 | rs4821124 | Intron | 3.8 × 10−8 | 1.13 [NR] | European | (Tsoi et al. [2012]) |