TY - JOUR AU - Davies, D. L. AU - Bouldin, D. W. PY - 1979 DA - 1979// TI - A cluster separation measure JO - IEEE Trans Patt Anal Mach Intell VL - 2 UR - https://doi.org/10.1109/TPAMI.1979.4766909 DO - 10.1109/TPAMI.1979.4766909 ID - Davies1979 ER - TY - STD TI - Fact Sheet—UMLS Metathesaurus. https://www.nlm.nih.gov/pubs/factsheets/umlsmeta.html UR - https://www.nlm.nih.gov/pubs/factsheets/umlsmeta.html ID - ref2 ER - TY - JOUR AU - Globerson, A. AU - Chechik, G. AU - Pereira, F. AU - Tishby, N. PY - 2007 DA - 2007// TI - Euclidean embedding of co-occurrence data JO - J Mach Learn Res VL - 8 ID - Globerson2007 ER - TY - STD TI - Gorg C, Tipney H, Verspoor K, Baumgartner WK, Cohen KB, Stasko J, Hunter LE (2010) Visualization and language processing for supporting analysis across the biomedical literature. In: International conference on knowledge-based and intelligent information and engineering systems proceedings, pp 420–429 ID - ref4 ER - TY - JOUR AU - Gu, J. AU - Feng, W. AU - Zeng, J. AU - Mamitsuka, H. AU - Zhu, S. PY - 2013 DA - 2013// TI - Efficient semisupervised medline document clustering with mesh-semantic and global-content constraints JO - IEEE Trans Cybern VL - 43 UR - https://doi.org/10.1109/TSMCB.2012.2227998 DO - 10.1109/TSMCB.2012.2227998 ID - Gu2013 ER - TY - JOUR AU - Hartigan, J. A. AU - Wong, M. A. PY - 1979 DA - 1979// TI - Algorithm as 136: a k-means clustering algorithm JO - J Royal Stat Soc. VL - 28 ID - Hartigan1979 ER - TY - STD TI - Hersh, W, Cohen, A, Yang, J, Bhupatiraju RT, Roberts P, Hearst M (2005) Trec 2005 genomics track overview. NIST Special Publication 500-266: The Fourteenth Text REtrieval conference proceedings ID - ref7 ER - TY - STD TI - Kim HK, Cho S (2017) Bag-of-concepts : comprehending document representation through clustering words in distributed representation. Neurocomputing ID - ref8 ER - TY - STD TI - Levy O, Goldberg Y (2014) Neural word embedding as implicit matrix factorization. In: Advances in neural information processing systems, pp 2177–2185 ID - ref9 ER - TY - STD TI - Logeswari S, Premalatha K (2013) Biomedical document clustering using ontology based concept weight. In: International conference on computer communication and informatics proceedings, pp 1–4, https://doi.org/10.1109/ICCCI.2013.6466273 ID - ref10 ER - TY - JOUR AU - Lvd, M. a. a. t. e. n. AU - Hinton, G. PY - 2008 DA - 2008// TI - Visualizing data using t-sne JO - J Mach Learn Res. VL - 9 ID - Lvd2008 ER - TY - STD TI - MEDLINE/PubMed Resource Guide. https://www.nlm.nih.gov/bsd/pmresources.html UR - https://www.nlm.nih.gov/bsd/pmresources.html ID - ref12 ER - TY - STD TI - MetaMap—a tool for recognizing UMLS concepts in text. https://metamap.nlm.nih.gov/ UR - https://metamap.nlm.nih.gov/ ID - ref13 ER - TY - STD TI - Mikolov T, Sutskever I, Chen K, Corrado G, Dean J (2013) Distributed representations of words and phrases and their compositionality. In: International conference on neural information processing systems, pp 3111–3119 ID - ref14 ER - TY - STD TI - Moen S, Ananiadou TSS (2013) Distributional semantics resources for biomedical text processing. In: Proceedings of the 5th international symposium on languages in biology and medicine, Tokyo, Japan, pp 39–43 ID - ref15 ER - TY - JOUR AU - Pearson, K. PY - 2008 DA - 2008// TI - Liii on lines and planes of closest fit to systems of points in space JO - London Edinburgh Dublin Philos Magaz J Sci VL - 2 UR - https://doi.org/10.1080/14786440109462720 DO - 10.1080/14786440109462720 ID - Pearson2008 ER - TY - STD TI - PubMed Open Access Subset. https://www.ncbi.nlm.nih.gov/pmc/tools/openftlist/ UR - https://www.ncbi.nlm.nih.gov/pmc/tools/openftlist/ ID - ref17 ER - TY - STD TI - SNOMED CT. https://www.nlm.nih.gov/healthit/snomedct/ UR - https://www.nlm.nih.gov/healthit/snomedct/ ID - ref18 ER - TY - STD TI - Shah S, Luo X (2018) Comparison of deep learning based concept representations for biomedical document clustering. In: IEEE EMBS international conference on biomedical & health informatics (BHI), pp 349–352. IEEE, New York ID - ref19 ER - TY - STD TI - Tulkens S, Daelemans W (2016) Using distributed representations to disambiguate biomedical and clinical concepts. arXiv preprint arXiv:1608.05605 UR - http://arxiv.org/abs/1608.05605 ID - ref20 ER - TY - STD TI - Van Rijsbergen C (1979) Information retrieval. dept. of computer science, university of glasgow https://citeseer.ist.psu.edu/vanrijsbergen79information.html UR - https://citeseer.ist.psu.edu/vanrijsbergen79information.html ID - ref21 ER - TY - STD TI - Yoo I, Hu X, Song I-Y (2006) A coherent graph-based semantic clustering and summarization approach for biomedical literature and a new summarization evaluation method. In: First international workshop on text mining in bioinformatics proceedings, pp 84–89 ID - ref22 ER - TY - STD TI - Zhang X, Jing L, Hu X, Ng M, Zhou X (2007) A comparative study of ontology based term similarity measure on pubmed document clustering. In: International conference on database systems for advanced applications proceedings, pp 115–126 ID - ref23 ER - TY - JOUR AU - Zhu, Y. AU - Yan, E. AU - Wang, F. PY - 2017 DA - 2017// TI - Semantic relatedness and similarity of biomedical terms: examining the effects of recency, size, and section of biomedical publications on the performance of word2vec JO - BMC Med Inform Decis Making VL - 17 UR - https://doi.org/10.1186/s12911-017-0498-1 DO - 10.1186/s12911-017-0498-1 ID - Zhu2017 ER - TY - JOUR AU - Zhu, S. AU - Zeng, J. AU - Mamitsuka, H. PY - 2009 DA - 2009// TI - Enhancing medline document clustering by incorporating mesh semantic similarity JO - Bioinformatics VL - 25 UR - https://doi.org/10.1093/bioinformatics/btp338 DO - 10.1093/bioinformatics/btp338 ID - Zhu2009 ER -